local updates commit

.gitignore

 builds/
-cmdsim_old.cmake
+cmake/

README.md

+# CLASim
+The closed-loop assistant (CLA) simulation framework (CLASim) is a simulation framework in C++ that allows simulation of the interaction between closed-loop medical systems consisting of patient monitors, closed-loop physiology management algorithms, and infusion pumps, and patient physiology. It relies on the <a href="https://physiology.kitware.com/" target="__blank">Pulse Physiology Engine</a> for simulating patient physiology
+
+## Getting Started
+### Installing Pulse and CLASim
+#### Pulse
+To install <a href="https://gitlab.kitware.com/physiology/engine" target="__blank">Pulse repository</a> and follow the instructions there.
+
+### Running Demo Examples

cmake/Modules/PulseConfig.cmake

-#
-#    FIND_PACKAGE(Pulse REQUIRED)
-#
-#    This file will define the following variables:
-#      - Pulse_LIBS                     : The list of libraries to link against.
-#      - Pulse_LIB_DIR                  : The directory(es) where lib files are. Calling LINK_DIRECTORIES
-#                                         with this path is NOT needed.
-#      - Pulse_INCLUDE_DIRS             : The Pulse include directories.
-#      - Pulse_VERSION                  : The version of this Pulse build. Example: "2.4.0"
-#      - Pulse_VERSION_MAJOR            : Major version part of Pulse_VERSION. Example: "2"
-#      - Pulse_VERSION_MINOR            : Minor version part of Pulse_VERSION. Example: "4"
-#      - Pulse_VERSION_PATCH            : Patch version part of Pulse_VERSION. Example: "0"
-#
-# ===================================================================================
-
-
-set(Pulse_INCLUDE_DIRS "/home/farooq/Programming/pulse/builds/install/include"
-                       "/home/farooq/Programming/pulse/builds/install/include/bind"
-                       "/home/farooq/Programming/pulse/builds/install/include/cdm"
-                       )
-if(MSVC)
-  set( Pulse_LIB_DIR "/home/farooq/Programming/pulse/builds/install/lib/$(Configuration)" )
-else()#TODO XCode might need a conditional
-  string(TOLOWER "${CMAKE_BUILD_TYPE}" lower_build_type)
-  set( Pulse_LIB_DIR "/home/farooq/Programming/pulse/builds/install/lib/${lower_build_type}" )
-endif()
-
-if(MSVC)
- set(LOG4CPP_LIB "log4cpp")
-else()
- set(LOG4CPP_LIB "liblog4cpp")
-endif()
-
-if (WIN32)
-  set(LIB_ENDING "lib")
-elseif (APPLE)
-  set(LIB_ENDING "a")
-else()
-  set(LIB_ENDING "a")
-endif()
-
-set(Pulse_INSTALL "/home/farooq/Programming/pulse/builds/install")
-
-set(Pulse_LIBS "${Pulse_LIB_DIR}/PulseEngine.${LIB_ENDING}" 
-               "${Pulse_LIB_DIR}/CommonDataModel.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/DataModelBindings.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/${LOG4CPP_LIB}.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/libprotobuf.${LIB_ENDING}"
-   )
-   
-set(Pulse_DEBUG_LIBS "${Pulse_LIB_DIR}/PulseEngine.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/CommonDataModel.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/DataModelBindings.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/${LOG4CPP_LIB}.${LIB_ENDING}"
-               "${Pulse_LIB_DIR}/libprotobufd.${LIB_ENDING}"
-   )
-
-set( Pulse_VERSION_MAJOR "1" )
-set( Pulse_VERSION_MINOR "0" )
-set( Pulse_VERSION_PATCH "0" )
-set( Pulse_VERSION_PATCH "1.0.0" )

cmdsim.cmake

@@ -2,8 +2,9 @@ cmake_minimum_required(VERSION 3.9.4)
 
 project(cmd)
 
+# use ddpkg -L libconfig++-dev to find the location of libconfig.h++ and libconfig++.so
 find_path(CONFIG++_INCLUDE_DIR libconfig.h++ /usr/include /usr/local/include)
-find_library(CONFIG++_LIBRARY NAMES config++ PATH /usr/lib /usr/local/lib)
+find_library(CONFIG++_LIBRARY NAMES libconfig++.a PATH /usr/lib/x86_64-linux-gnu/)
 
 
 include_directories(include)

src/SimEngine.cpp

@@ -3,7 +3,7 @@
 #include <thread>
 #include <vector>
 #include <map>
-#include <libconfig.h++>
+#include <libconfig.h>
 #include <time.h> /* clock_t, clock, CLOCKS_PER_SEC */
 
 #include "Pump.h"