Realtime capability added

CLA_Logger.cpp

@@ -6,7 +6,7 @@ CLA::LOGGER::LOGGER() {
 }
 
 CLA::LOGGER::LOGGER(const string& filename): m_filename(move(filename)) {
-    m_logstream.open(prosim_logs_dir+m_filename);
+    m_logstream.open(prosim_logs_dir+m_filename, ios::out|ios::binary);
 }
 
 string CLA::LOGGER::current_time(bool display_tz){

SimulationEngine.cpp

@@ -10,6 +10,7 @@
 #include "HardwareSimulator.h"
 #include "CLA_Logger.h"
 #include "SimulationEngine.h"
+#include "Realtime.h"
 
 // Include the various types you will be using in your code
 #include "scenario/SEDataRequestManager.h"
@@ -81,7 +82,8 @@ void Simulation(const string patient_name, const std::shared_ptr<Config>& cfg, c
     HardwareSimulator prosim(&myserial, &logger, &sim_env);
     prosim.LoadConfig(filepath);
 
-    //sim_env.logger = std::make_shared<SimulationLogger>(prosim_results_dir"SimulationEngineLog_"+patient_name+".txt");
+    CLA::Realtime rt(pe, &logger);
+    rt.LoadConfig(filepath);
 
     bool STOP = false; // Execute stop hemmorrhage only once; without this it be executed for each timestep
     bool DEVICES_START = false;
@@ -118,9 +120,12 @@ void Simulation(const string patient_name, const std::shared_ptr<Config>& cfg, c
 	}
 
 	// track patient data
-	pe->GetEngineTracker()->TrackData(pe->GetSimulationTime(TimeUnit::s));
-	pe->AdvanceModelTime();
+	//pe->GetEngineTracker()->TrackData(pe->GetSimulationTime(TimeUnit::s));
+	//pe->AdvanceModelTime();
+  rt.AdvanceModelTime(1.0);
 	sim_env.time_index++;
+  pe->GetEngineTracker()->TrackData((double)sim_env.time_index);
+
     }// End while looop
 }// End Simulation function
 
@@ -139,7 +144,8 @@ void Global_LoadConfig(std::unique_ptr<PhysiologyEngine>& engine, const std::sha
     env->simulation_injury_start = cf->lookup("simulation.time.injury_start");
     env->simulation_injury_stop = cf->lookup("simulation.time.injury_stop");
     env->time_index = 0; // initialize the time index
-    env->engine_timestep = engine->GetTimeStep(TimeUnit::s);
+    //env->engine_timestep = engine->GetTimeStep(TimeUnit::s);
+    env->engine_timestep = 1.0;
     env->simulation_timesteps = env->simulation_time / env->engine_timestep;
     env->simulation_injury_start_timestep = env->simulation_injury_start/env->engine_timestep;
     env->simulation_injury_stop_timestep = env->simulation_injury_stop/env->engine_timestep;

prosim.cmake

@@ -61,6 +61,7 @@ set( my_srcs
      CLA_Logger.cpp
      #example.cpp
      SimulationEngine.cpp
+     Realtime.cpp
 )
 
 add_executable(prosim ${my_srcs})

resources/scenario.cfg

@@ -3,14 +3,16 @@
 
 prosim = {
     delay_5_sec = 5.0; # Prosim delay-->arbitrary value
-};
-
+}
 
+realtime = {
+    time_steps = 12.0; # How many simulation seconds result into 1s of real time 
+}
 
 simulation = {
     time = {
-        run = 3600.0;   	  # Time -> Seconds # How long should simulation run
-        injury_start = 5.0; # When should injury be introduced to patient
+        run = 120.0;         # Time -> Seconds # How long should simulation run
+        injury_start = 5.0;   # When should injury be introduced to patient
         injury_stop = 700.0;  # When should injury  be stopped
     }
 };