Missed these Phys files

environment/GUI/error.log

-Error during dialog loading of C:/Users/SightH/ACT-R_Phi/environment/GUI/dialogs/25-event-queue.tcl: window name "event_queue_button" already exists in parent
+Error during dialog loading of C:/Users/SightH/Research-Repos/ACT-R_Phi/environment/GUI/dialogs/25-event-queue.tcl: window name "event_queue_button" already exists in parent
+communication error result: 
\ No newline at end of file

environment/GUI/init/05-current-net.tcl

-# Port settings for ACT-R server started at 10:29:21 10/08/2020
-set actr_port 2651
+# Port settings for ACT-R server started at 21:23:33 10/12/2020
+set actr_port 2654
 set actr_address "192.168.1.118"

environment/GUI/init/39130631820076711.tem

-# Port settings for ACT-R server started at 21:23:52 10/07/2020
-set actr_port 2663
-set actr_address "192.168.1.118"

environment/GUI/init/48325366021863002.tem

-# Port settings for ACT-R server started at 21:23:52 10/07/2020
-set actr_port 2660
-set actr_address "192.168.1.118"

phi-help/live-phys-plot.py

+#----
+# By Chris Dancy, Dept of Computer Science, Bucknell University
+# Python functions to allow simple live graphing of Phys Variables (and perhaps others)
+# Assumes file with 2 columns and each row separated by comma
+# Used [https://pythonprogramming.net/live-graphs-matplotlib-tutorial/] for initial dev of this functionality
+#----
+
+import argparse
+import matplotlib.pyplot as plt
+import matplotlib.animation as animation
+import matplotlib.style as style
+
+class PlotPhi:
+	def __init__(self, data_file_name):
+		self.data_file = data_file_name
+
+
+	def main_func(self):
+		style.use("fivethirtyeight")
+		self._fig = plt.figure()
+		self._ax1 = self._fig.add_subplot(1,1,1)
+		ani = animation.FuncAnimation(self._fig, self.animate, interval=1000)
+		plt.title(self.data_file)
+		plt.show()
+
+
+	def animate(self, i):
+		"""
+		Used to updaate our plot with new data at every interval
+			(interval decided by call to )
+		"""
+		data_file = open(self.data_file, "r")
+		graph_data = data_file.read()
+		rows = graph_data.split('\n')
+		xs = []
+		ys = []
+
+		for row in rows:
+			if (len(row) > 1):
+				(x, y) = row.split(",")
+				xs.append(float(x))
+				ys.append(float(y))
+		self._ax1.clear()
+		self._ax1.plot(xs, ys)
+
+
+if __name__ == '__main__':
+	parser = argparse.ArgumentParser(description='Plot ACT-R/Phi variables')
+	parser.add_argument('--data_file', type=str, default="../user-loads/save-phi-vals.txt", help='The name (and location) of the file that holds those data you wish to plot.')
+	args = parser.parse_args()
+	my_plot = PlotPhi(args.data_file)
+	my_plot.main_func()

user-loads/ModelSolver.INI

 <ini>
-  <windowtop> 197 </windowtop>
-  <windowleft> 263 </windowleft>
-  <windowhigh> 200 </windowhigh>
+  <windowtop> 270 </windowtop>
+  <windowleft> 283 </windowleft>
+  <windowhigh> 189 </windowhigh>
   <windowwide> 377 </windowwide>
   <windowstate> 0 </windowstate>
   <pipeinterval> 10 </pipeinterval>

user-loads/Physiology_thread.lisp

@@ -344,7 +344,6 @@ t)
 			#+:ccl	(ccl::current-directory-name)
 			#+:sbcl	(sb-posix:getcwd)
 			)
-		(format t "~a~&" (concatenate 'string model hide-gui non-gui-version activity-timeout))
 		#+:ccl	(ccl::cwd *HumModDir*)
 		#+:sbcl	(sb-posix:chdir *HumModDir*)
 		(setf (phys-module-HProc phys)
@@ -1104,13 +1103,24 @@ t)
 	(create-ics-from-out solver-out-file ics-out-file phys)))
 
 #|---End Physiological Initial Condition Functions---|#
-
+#|---Start Physiological data help functions---|#
 ;;;
 ;;;;Helpful functions for examining physiological data
 (defun get-recorded-vals ()
 	(phys-module-vals-analysis (get-module physio)))
 
+(defun output-phys-var (var-name &key (out-file-name "phys-var.txt") (phys (get-module physio)))
+	"Output physiological variable state (value) to given file
+		@param var-name: [string] Name of physiological variable who's value we will output
+		@key out-file-name: [string] name of output file
+		@key phys: Physiological module to use for output (our own physio by default)"
+		(let ((var-val (read-from-string (cadar (car (get-phys-vals nil (list (list var-name))))))))
+			(with-open-file
+				(out-file out-file-name
+					:direction :output :if-exists :append :if-does-not-exist :create)
+				(format out-file "~3$,~3$~&" (mp-time) var-val))))
 
+#|---End Physiological data help functions---|#
 ;;;
 ;;;;;ACT-R Module Section
 (defstruct phys-module